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An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

Benchmark pipelines for the ProMod3 modelling engine

Very simple role to disable selinux and reboot the machine

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).

Python tool to reduce size and redundancy of phylogenetic datasets

Wrapper repository for the entire Krini project

Material and data for the workshop in South Africa (2018)

Copy of of the original IPLT repository

Copy of of the original IPLT repository

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

MIRZA-G pipeline code written for Jobber.