Explore projects
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Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021
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☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.Updated -
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zavolan_group / tools / zarp-cli
Apache License 2.0User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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TBRU / MetagenomicSnake
MIT LicenseMetagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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Very simple role to disable selinux and reboot the machine
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zavolan_public / PAQR_KAPAC
GNU General Public License v2.0 or laterscripts, pipelines and documentation to run PAQR and KAPAC
KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes
PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
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TBRU / TACOS
Apache License 2.0TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).
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TBRU / Treemmer
GNU General Public License v3.0 or laterPython tool to reduce size and redundancy of phylogenetic datasets
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Python script that can be used to compress a directory including all its files and subdirectories.
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Bienchen / iplt
GNU General Public License v3.0 onlyCopy of of the original IPLT repository
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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