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zavolan_group / tools / zarp-cli
Apache License 2.0User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067
Analysis with exponential growth population prior, and 1/x prior on the clock rate
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schwede / af2-at-scicore
MIT LicenseRun the AlphaFold2 pipeline on the sciCORE cluster... provided by the SWISS-MODEL team ;)
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schwede / Mobius
Apache License 2.0Mobius - A python package for peptide optimization using Bayesian optimization
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Jean-Guillaume Piccinali / SPH-EXA_mini-app
MIT LicenseUpdated -
Jean-Guillaume Piccinali / Mirror Test
GNU General Public License v3.0 or laterUpdated -
zavolan_group / pipelines / scRNA-seq-simulation
MIT LicenseThe projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.
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schwede / ma-wilkins-import
MIT LicenseTools to import models of the Wilkins group (Tara) to ModelArchive
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schwede / modelcif-converters
MIT LicenseTools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.
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zavolan_group / tools / ascii-alignment-pileup
Apache License 2.0Generates an ASCII-style pileup of read alignments in one or more BAM files against one or more regions specified in a BED file
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zavolan_group / pipelines / Bind-n-Seq PWMs
MIT LicenseUpdated -
schwede / casp15_ema
MIT LicenseUpdated -
schwede / CASP15 Ligand Scoring
MIT LicenseUpdated -
zavolan_group / tools / Transcript sampler
MIT LicenseUpdated -
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