Explore projects
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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Python script that can be used to compress a directory including all its files and subdirectories.
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TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).
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scripts, pipelines and documentation to run PAQR and KAPAC
KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes
PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
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Very simple role to disable selinux and reboot the machine
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Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.Updated -
Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021
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This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.
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