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Generates an ASCII-style pileup of read alignments in one or more BAM files against one or more regions specified in a BED file
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This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.
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A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.
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Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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Extract ligand and binding site information from PDB X-ray validation reports
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Tools to import models of the Wilkins group (Tara) to ModelArchive
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Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.
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An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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