SCHWED-876: Refactored reconstruct_sidechain to add consider_ligands flag

sidechain/doc/index.rst

@@ -20,43 +20,7 @@ function:
 
 .. literalinclude:: ../../../tests/doc/scripts/sidechain_reconstruct.py
 
-.. method:: Reconstruct(prot, keep_sidechains=False, build_disulfids, \
-                        rotamer_model="frm", consider_hbonds=True, \
-                        rotamer_library=None)
-
-  The function takes a structure and reconstructs its sidechains given the input 
-  parameters.
-
-  :param prot:          Structure for sidechain reconstruction. Note, that the
-                        sidechain reconstruction gets directly applied on the
-                        structure itself.
-
-  :param keep_sidechains: Flag, whether complete sidechains in *prot* (i.e. 
-                          containing all required atoms) should be kept rigid
-                          and directly be added to the frame.
-
-  :param build_disulfids: Flag, whether possible disulfid bonds should be 
-                          searched. If a disulfid bond is found, the two
-                          participating cysteins are fixed and added to
-                          the frame.
-
-  :param rotamer_model: Rotamer model to be used, can either be "frm" or "rrm"
-
-  :param consider_hbonds: Flag, whether hbonds should be evaluated in the energy
-                          function. If set to False, no hydrogens will be built
-                          when building rotamers and frame and the **add_polar_hydrogens**
-                          flag won't have any consequences.
-
-  :param rotamer_library: A rotamer library to extract the 
-                          rotamers from.
-
-
-  :type prot:           :class:`ost.mol.EntityHandle`
-  :type keep_sidechains: :class:`bool`
-  :type build_disulfids: :class:`bool`
-  :type rotamer_model:  :class:`str`
-  :type consider_hbonds: :class:`bool`
-  :type rotamer_library: :class:`BBDepRotamerLib` / :class:`RotamerLib`
+.. autofunction:: Reconstruct
 
 
 Sidechain Module Functionality