Fixed occupancy for atoms taken from templates (set all to 1).

modelling/src/model.cc

@@ -219,7 +219,7 @@ bool CopyIdentical(ResidueView src_res, ResidueHandle dst_res, XCSEditor& edi,
       continue;
     }
     edi.InsertAtom(dst_res, a->GetName(), a->GetPos(), a->GetElement(), 
-                   a->GetOccupancy(), a->GetBFactor());
+                   1.0, a->GetBFactor());
   }
   return true;
 }
@@ -241,10 +241,10 @@ bool CopyMSE(ResidueView src_res, ResidueHandle dst_res, XCSEditor& edi,
     }
     if (a->GetName()=="SE") {
       edi.InsertAtom(dst_res, "SD", a->GetPos(), "S", 
-                     a->GetOccupancy(), a->GetBFactor());             
+                     1.0, a->GetBFactor());             
     } else {
       edi.InsertAtom(dst_res, a->GetName(), a->GetPos(), a->GetElement(), 
-                     a->GetOccupancy(), a->GetBFactor());            
+                     1.0, a->GetBFactor());            
     }
   }
   return true;
@@ -319,7 +319,7 @@ bool CopyModified(ResidueView src_res, ResidueHandle dst_res,
       continue;
     }
     edi.InsertAtom(dst_res, a->GetName(), a->GetPos(), a->GetElement(), 
-                   a->GetOccupancy(), a->GetBFactor());
+                   1.0, a->GetBFactor());
   }
   return true;
 }
@@ -342,7 +342,7 @@ bool CopyNonConserved(ResidueView src_res, ResidueHandle dst_res,
         continue;
       }
       edi.InsertAtom(dst_res, a->GetName(), a->GetPos(), a->GetElement(), 
-                     a->GetOccupancy(), a->GetBFactor());     
+                     1.0, a->GetBFactor());     
     }
   }
   return false;