SCHWED-4667: Update documentation

doc/container/docker.rst

@@ -113,7 +113,7 @@ To run a script with the upated compound library, use the -v option for mounting
 .. code-block:: bash
 
   docker run --rm -v /home/<USER>:/home \
-  -v <COMPLIB_DIR_LOCALHOST>:<COMPLIB_DIR_CONTAINER> \
+  -v <COMPLIB_DIR_LOCALHOST>/compounds.chemlib:<COMPLIB_DIR_CONTAINER>/compounds.chemlib \
   <IMAGE_NAME> script.py pdbs/struct.pdb
 
 with COMPLIB_DIR_LOCALHOST being the directory that contains the newly generated 

doc/container/singularity.rst

@@ -43,13 +43,13 @@ To see the help for each individual app run:
 
 .. code-block:: bash
 
-    singularity help --app <APP NAME> <PATH TO PROMOD IMAGE>
+    singularity run-help --app <APP NAME> <PATH TO PROMOD IMAGE>
 
 Eg.:
 
 .. code-block:: bash
 
-    singularity help --app PM promod.img
+    singularity run-help --app PM promod.img
 
 To list all available ProMod3 modelling actions:
 
@@ -74,14 +74,15 @@ Build a new library:
 .. code-block:: bash
 
   singularity run --app ChemdictTool <IMAGE> create components.cif.gz \
-              compounds.chemlib
+  compounds.chemlib
 
 Run some script with an updated compound library from localhost:
 
 .. code-block:: bash
 
-  singularity run -B <COMPLIB_DIR_LOCALHOST>:<COMPLIB_DIR_CONTAINER> --app PM \
-              <IMAGE> my_script.py
+  singularity run \
+  -B <COMPLIB_DIR_LOCALHOST>/compounds.chemlib:<COMPLIB_DIR_CONTAINER>/compounds.chemlib \
+  --app PM <IMAGE> my_script.py
 
 Same as for the Docker, if you didn't meddle with the original Dockerfile, 
 <COMPLIB_DIR_CONTAINER> should be /usr/local/share/openstructure.