Renamed meld to rawmodel

CHANGELOG

@@ -14,5 +14,6 @@ Changes in Release 0.1
 Changes in Release 0.2
 --------------------------------------------------------------------------------
  * added html documentation to repository
+ * meld renamed to rawmodel
 
 ..  LocalWords:  Changelog reStructuredText changelog txt

actions/pm-build-rawmodel

 #!/usr/bin/env ost
 
 import os, argparse
-from promod3 import meld
+from promod3 import rawmodel
 from promod3.core import argcheck, helper
 
 ### CHANGELOG - START
@@ -68,7 +68,7 @@ aln = io.LoadAlignment(opts.alignment_file)
 # how can we do multi-whatever things?
 
 aln.AttachView(1, tpl.CreateFullView())
-result = meld.BuildRawModel(aln)
+result = rawmodel.BuildRawModel(aln)
 io.SavePDB(result.model, opts.model_file)
 if not os.path.isfile(opts.model_file):
   helper.MsgErrorAndExit("Failed to write model file '%s'." % opts.model_file, 5)

doc/contributing.rst

@@ -44,7 +44,14 @@ what goes into this branch:
 * Your project needs documentation
 * It must not break the ability of out-of-source builds
 
-The reason to be a bit restrictive on branches which end up in actual releases, should be mostly obvious: |project| is used by productive services as a third party toolbox. There it is not an item of active development and people probably have no insight in its internals. So messing up a new release creates a lot of extra work for a lot of people. First for the developer of a service to find out that |project| has turned malicious, then for the maintainer of this package to figure out that its your contribution messing things up and in the end for you, fixing the problems.
+The reason to be a bit restrictive on branches which end up in actual releases,
+should be mostly obvious: |project| is used by productive services as a third
+party toolbox. There it is not an item of active development and people
+probably have no insight in its internals. So messing up a new release creates
+a lot of extra work for a lot of people. First for the developer of a service
+to find out that |project| has turned malicious, then for the maintainer of
+this package to figure out that its your contribution messing things up and in
+the end for you, fixing the problems.
 
 The place where you may get messy is your own |git| branch within the |project|
 repository. This is basically where you should develop your project. Once you
@@ -463,7 +470,7 @@ top level :file:`CMakeLists.txt`:
   ## e.g. add_subdirectory(src), subdirs have their own CMakeLists.txt
   add_subdirectory(config)
   add_subdirectory(core)
-  add_subdirectory(meld)
+  add_subdirectory(rawmodel)
   add_subdirectory(sidechains)
   add_subdirectory(loop)
   add_subdirectory(scripts)

doc/developers.rst

@@ -10,7 +10,7 @@ Contents:
    :maxdepth: 2
 
    core/index
-   meld/index
+   rawmodel/index
    buildsystem
    contributing
 

doc/html/_modules/index.html

@@ -47,7 +47,7 @@
   <h1>All modules for which code is available</h1>
 <ul><li><a href="promod3/core/argcheck.html">promod3.core.argcheck</a></li>
 <li><a href="promod3/core/helper.html">promod3.core.helper</a></li>
-<li><a href="promod3/meld.html">promod3.meld</a></li>
+<li><a href="promod3/rawmodel.html">promod3.rawmodel</a></li>
 </ul>
 
           </div>
@@ -86,7 +86,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2013, Bienchen.
-      Last updated on Oct 16 09:31, 2014.
+      Last updated on Nov 04 11:22, 2014.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>

doc/html/_modules/promod3/core/argcheck.html

@@ -193,7 +193,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2013, Bienchen.
-      Last updated on Oct 16 09:31, 2014.
+      Last updated on Nov 04 11:22, 2014.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>

doc/html/_modules/promod3/core/helper.html

@@ -113,7 +113,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2013, Bienchen.
-      Last updated on Oct 16 09:31, 2014.
+      Last updated on Nov 04 11:22, 2014.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>

doc/html/_sources/changelog.txt

@@ -14,5 +14,6 @@ Changes in Release 0.1
 Changes in Release 0.2
 --------------------------------------------------------------------------------
  * added html documentation to repository
+ * meld renamed to rawmodel
 
 ..  LocalWords:  Changelog reStructuredText changelog txt