More pithonic module loading

meld/tests/test_raw_modeling.py

 import unittest
 from promod3 import *
-from promod3.meld import *
+from promod3 import meld
 from ost import conop, seq, io, mol
 
 class RawModelingTests(unittest.TestCase):
@@ -13,14 +13,14 @@ class RawModelingTests(unittest.TestCase):
     # test that BuildRawModel throws exception when no view is attached
     aln=seq.CreateAlignment(seq.CreateSequence('A', 'acdef'), 
                             seq.CreateSequence('B', 'ac-ef'))
-    self.assertRaises(RuntimeError, BuildRawModel, aln)
+    self.assertRaises(RuntimeError, meld.BuildRawModel, aln)
     
   def testModeledSequence(self):
     # test if the model has the sequence we want.
     tpl=io.LoadPDB('data/raw-modeling/gly.pdb')
     aln=io.LoadAlignment('data/raw-modeling/seq.fasta')
     aln.AttachView(1, tpl.CreateFullView())
-    result=BuildRawModel(aln)
+    result=meld.BuildRawModel(aln)
     seq1=seq.SequenceFromChain('MODEL', result.model.chains[0])
     self.assertEqual(seq1.string, aln.sequences[0].string)
 
@@ -29,7 +29,7 @@ class RawModelingTests(unittest.TestCase):
     tpl=io.LoadPDB('data/raw-modeling/gly.pdb')
     aln=io.LoadAlignment('data/raw-modeling/del.fasta')
     aln.AttachView(1, tpl.CreateFullView())
-    result=BuildRawModel(aln)
+    result=meld.BuildRawModel(aln)
     residues=result.model.residues
     self.assertEqual(len(result.gaps), 1)
     self.assertEqual(result.gaps[0].before, residues[2])
@@ -41,7 +41,7 @@ class RawModelingTests(unittest.TestCase):
     tpl=io.LoadPDB('data/raw-modeling/gly.pdb')
     aln=io.LoadAlignment('data/raw-modeling/ins.fasta')
     aln.AttachView(1, tpl.CreateFullView())
-    result=BuildRawModel(aln)
+    result=meld.BuildRawModel(aln)
     residues=result.model.residues
     self.assertEqual(len(result.gaps), 1)
     self.assertEqual(result.gaps[0].before, residues[1])
@@ -54,7 +54,7 @@ class RawModelingTests(unittest.TestCase):
     tpl=io.LoadPDB('data/raw-modeling/gly.pdb')
     aln=io.LoadAlignment('data/raw-modeling/ter.fasta')
     aln.AttachView(1, tpl.CreateFullView())
-    result=BuildRawModel(aln)
+    result=meld.BuildRawModel(aln)
     residues=result.model.residues
     self.assertEqual(len(result.gaps), 2)
     self.assertEqual(result.gaps[0].before, mol.ResidueHandle())
@@ -69,7 +69,7 @@ class RawModelingTests(unittest.TestCase):
     tpl=io.LoadPDB('data/raw-modeling/sep.pdb')
     aln=io.LoadAlignment('data/raw-modeling/sep.fasta')
     aln.AttachView(1, tpl.CreateFullView())
-    result=BuildRawModel(aln)
+    result=meld.BuildRawModel(aln)
     residues=result.model.residues
     self.assertEqual(len(residues), 1)
     self.assertEqual(len(residues[0].atoms), 6)
@@ -85,7 +85,7 @@ class RawModelingTests(unittest.TestCase):
     tpl=io.LoadPDB('data/raw-modeling/cbeta.pdb')
     aln=io.LoadAlignment('data/raw-modeling/cbeta.fasta')
     aln.AttachView(1, tpl.CreateFullView())
-    result=BuildRawModel(aln)
+    result=meld.BuildRawModel(aln)
     residues=result.model.residues
     assert not residues[0].FindAtom("CB").IsValid()
     assert not residues[1].FindAtom("CB").IsValid()