Updated documentation

doc/html/_modules/index.html

doc/html/_modules/promod3/loop.html

doc/html/_modules/promod3/pipeline/run_engine.html

doc/html/_modules/promod3/rawmodel/_closedels.html

doc/html/_sources/buildsystem.txt

doc/html/_sources/contributing.txt

doc/html/_sources/developers.txt

doc/html/_sources/loop/backbone.txt

doc/html/_sources/loop/backbone_loop_score.txt

doc/html/_sources/loop/load_loop_objects.txt

doc/html/_sources/loop/loop_closing.txt

doc/html/_sources/loop/monte_carlo.txt

doc/html/_sources/pipeline/index.txt

doc/html/_sources/pipeline/run_engine.txt

doc/html/_sources/rawmodel/index.txt

doc/html/contributing.html

doc/html/core/helper.html

doc/html/developers.html

doc/html/genindex.html

doc/html/index.html