SCHWED-785: added timers in various parts of the code.

config/src/config.hh.in

core/doc/index.rst

core/pymod/export_runtime_profiling.cc

core/src/runtime_profiling.hh

loop/src/backbone_relaxer.cc

loop/src/ccd.cc

loop/src/kic.cc

loop/src/loop_candidate.cc

loop/src/loop_object_loader.cc

loop/src/torsion_sampler.cc

modelling/pymod/CMakeLists.txt

modelling/pymod/_closegaps.py

modelling/pymod/_pipeline.py

modelling/pymod/_ring_punches.py

modelling/src/model.cc

modelling/tests/test_close_gaps.py

modelling/tests/test_pipeline.py

sidechain/pymod/CMakeLists.txt

sidechain/pymod/_reconstruct_sidechains.py

sidechain/src/bb_dep_rotamer_lib.cc