implemented the detection of OMBBs that form complexes with OMBBs

barrOs.py

@@ -9,7 +9,7 @@ number_of_jobs = 1
 barros.print_hello()
 
 # Get inputs
-input_files, input_types, input_mode, outf = barros.get_inputs(sys.argv)
+input_files, input_types, input_mode, outf, complexes_only, multimer_only = barros.get_inputs(sys.argv)
 
 # Check if inputs are correct in case we are not dealing with a 'help' check
 
@@ -36,7 +36,7 @@ if __name__ ==  '__main__':
 
             # Prepare all parallel jobs and run the main barrOs method for each pdbid
             separated_jobs = barros.chunk_list(pdbIDs, number_of_jobs)
-            list_arguments = [i for i in zip(range(number_of_jobs), [input_mode for job in separated_jobs], separated_jobs)]
+            list_arguments = [i for i in zip(range(number_of_jobs), [input_mode for job in separated_jobs],[complexes_only for job in separated_jobs],[multimer_only for job in separated_jobs], separated_jobs)]
 
             pool = mp.Pool(number_of_jobs)
             data = pool.map(barros.run_barros, list_arguments)