Merge branch '2024-12-ma-denv' into develop

projects/2024-12-ma-denv/README.md

 # Modelling AVITHRAID (ToDo: change to real title)
 
-[Link to project in ModelArchive](https://www.modelarchive.org/doi/10.5452/ma-chfwm) (ToDo: update to final ID as requested by user) (incl. background on project itself and link to the publication)
+[Link to project in ModelArchive](https://www.modelarchive.org/doi/10.5452/ma-denv) (incl. background on project itself and link to the publication)
 
 Modelling setup:
-- ToDo: finish
 - SWISS-MODEL web server
-- figure out: automodel or interactive
+- all jobs ran in auto-mode
 
 Input files for conversion:
 - SWISS-MODEL ModelCIF files
-- ToDo: does the script require to have all files in a directory? Or does the
-        script run with all files as arguments?
 
 Special features here:
-- ToDo: fill this section
+- None, just plain SWISS-MODEL ModelCIF files
 
 Content:
-- ToDo: fill with files included in this directory - scripts, example data...
+- translate2modelcif.py: Script to enrich ModelCIF files
+- uniprotkb.py: Module to deal with UNP entries
+- macif.py: Module to aid editing ModelCIF files
+- example*: Example files
 
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