Remove old fragments

projects/novelfams/translate2modelcif.py

@@ -139,13 +139,6 @@ class _LocalPairwisePAE(
     software = None
 
 
-class _NmpfamsdbTrgRef(modelcif.reference.TargetReference):
-    """NMPFamsDB as target reference."""
-
-    name = "Other"
-    other_details = "NMPFamsDB"
-
-
 class _LPeptideAlphabetWithX(ihm.LPeptideAlphabet):
     """Have the default amino acid alphabet plus 'X' for unknown residues."""
 
@@ -242,7 +235,7 @@ def _get_pdb_files(model_dir):
 
 def _get_title(fam_name):
     """Get a title for this modelling experiment."""
-    return f"Model for NMPFamsDB Family {fam_name}"
+    return f"Model for {fam_name}"
 
 
 def _get_model_details(fam_name):
@@ -713,9 +706,10 @@ def _translate2modelcif(f_name, af2_lst, opts):
     else:
         cifext = "cif"
     mdl_path = os.path.join(opts.out_dir, f"{f_name}.{cifext}")
-    if os.path.exists(mdl_path):
-        print(f"  {f_name} already done")
-        return
+    # ToDo: re-enable for final version
+    #if os.path.exists(mdl_path):
+    #    print(f"  {f_name} already done")
+    #    return
 
     # get model details
     mdl_details = _get_model_details(