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Commit dbc1bb2e authored by Bienchen's avatar Bienchen
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Add PDB70 for AlphaFold DBs

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......@@ -526,6 +526,12 @@ def _get_sequence_dbs_alphafold(seq_dbs):
version="2018_08",
release_date=None,
),
"PDB70": modelcif.ReferenceDatabase(
"PDB70",
"http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/"
+ "hhsuite_dbs/old-releases/pdb70_from_mmcif_200401.tar.gz",
release_date=datetime.datetime(2020, 4, 1),
),
}
return [db_dict[seq_db] for seq_db in seq_dbs]
......@@ -546,7 +552,7 @@ def _get_modelcif_protocol_data(data_labels, target_entities, model, msa):
elif label == "alphafold_reference_dbs":
data.extend(
_get_sequence_dbs_alphafold(
["MGnify", "UniRef90", "BFD", "Uniclust30"]
["MGnify", "UniRef90", "BFD", "Uniclust30", "PDB70"]
)
)
elif label == "msas":
......
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