formats.rst

Supported File Formats

Structure File Formats

The following file formats are supported by :func:`~ost.io.LoadEntity`.

PDB - Brookhaven PDB File

Fine grained control over PDB file import is available via the :func:`~ost.io.LoadPDB` function. The PDB importer support loading gzipped PDB files. gzipped PDB files are detected by the .gz file extension.

Recognized File Extensions

ent, pdb, ent.gz, pdb.gz

Format Name

pdb

PQR

Recognized File Extensions

pqr

Format Name

pqr

CRD - CARD format file used by CHARMM

Recognized File Extensions

crd

SDF

Recognized File Extensions

sdf

Sequence File Formats

FASTA

Recognized File Extensions

fasta, fna, fas, fa, fsa

Format Name

fasta

ClustalW

Recognized File Extensions

aln

Format Name

clustal

Promod

Recognized File Extensions

ali

Format Name

promod

PIR

Recognized File Extensions

pir

Format Name

pir