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Commit 1a0f9f5b authored by Andrew Waterhouse's avatar Andrew Waterhouse
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decode subprocess sout

parent ba9dc507
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......@@ -667,7 +667,8 @@ class HHblits:
job = subprocess.Popen(cs_cmd, shell=True, cwd=self.working_dir,
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
sout, _ = job.communicate()
if b'Wrote abstract state sequence to' in sout:
lines = sout.decode()
if 'Wrote abstract state sequence to' in sout:
return cs_file
ost.LogWarning('Creating column state sequence file (%s) failed' % \
......
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