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Added seq.ProfileHandle class and io.LoadSequenceProfile to work with profiles.
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- modules/io/pymod/wrap_io.cc 3 additions, 0 deletionsmodules/io/pymod/wrap_io.cc
- modules/io/src/io_manager.cc 42 additions, 5 deletionsmodules/io/src/io_manager.cc
- modules/io/src/io_manager.hh 20 additions, 4 deletionsmodules/io/src/io_manager.hh
- modules/io/src/seq/CMakeLists.txt 5 additions, 0 deletionsmodules/io/src/seq/CMakeLists.txt
- modules/io/src/seq/hhm_io_handler.cc 179 additions, 0 deletionsmodules/io/src/seq/hhm_io_handler.cc
- modules/io/src/seq/hhm_io_handler.hh 52 additions, 0 deletionsmodules/io/src/seq/hhm_io_handler.hh
- modules/io/src/seq/load.cc 10 additions, 0 deletionsmodules/io/src/seq/load.cc
- modules/io/src/seq/load.hh 5 additions, 1 deletionmodules/io/src/seq/load.hh
- modules/io/src/seq/profile_io_handler.hh 93 additions, 0 deletionsmodules/io/src/seq/profile_io_handler.hh
- modules/io/src/seq/pssm_io_handler.cc 147 additions, 0 deletionsmodules/io/src/seq/pssm_io_handler.cc
- modules/io/src/seq/pssm_io_handler.hh 54 additions, 0 deletionsmodules/io/src/seq/pssm_io_handler.hh
- modules/io/tests/CMakeLists.txt 1 addition, 0 deletionsmodules/io/tests/CMakeLists.txt
- modules/io/tests/test_io_sequence_profile.cc 261 additions, 0 deletionsmodules/io/tests/test_io_sequence_profile.cc
- modules/io/tests/testfiles/test_hmm.hhm 31 additions, 0 deletionsmodules/io/tests/testfiles/test_hmm.hhm
- modules/io/tests/testfiles/test_pssm.pssm 14 additions, 0 deletionsmodules/io/tests/testfiles/test_pssm.pssm
- modules/seq/base/pymod/CMakeLists.txt 1 addition, 0 deletionsmodules/seq/base/pymod/CMakeLists.txt
- modules/seq/base/pymod/export_profile_handle.cc 80 additions, 0 deletionsmodules/seq/base/pymod/export_profile_handle.cc
- modules/seq/base/pymod/wrap_seq.cc 2 additions, 1 deletionmodules/seq/base/pymod/wrap_seq.cc
- modules/seq/base/src/CMakeLists.txt 2 additions, 0 deletionsmodules/seq/base/src/CMakeLists.txt
- modules/seq/base/src/hmm.hh 1 addition, 0 deletionsmodules/seq/base/src/hmm.hh
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