Changed value of bond_feasibility check for SLOPPY and CHARMM profiles

Set bond_feasibility_check to True for SLOPPY and CHARMM profiles, kept
it to False for the STRICT profile

modules/io/doc/profile.rst

@@ -55,7 +55,7 @@ SLOPPY:
 
     IOProfile(dialect='PDB', strict_hydrogens=False, quack_mode=True,
               fault_tolerant=True, join_spread_atom_records=False,
-              no_hetatms=False, bond_feasibility_check=False)
+              no_hetatms=False, bond_feasibility_check=True)
 
 CHARMM:
 
@@ -66,7 +66,7 @@ CHARMM:
 
     IOProfile(dialect='CHARMM', strict_hydrogens=False, quack_mode=True,
               fault_tolerant=True, join_spread_atom_records=True,
-              no_hetatms=False, bond_feasibility_check=False)
+              no_hetatms=False, bond_feasibility_check=True)
 
 
 The IOProfile Class

modules/io/pymod/__init__.py

@@ -47,9 +47,11 @@ if not profiles:
   profiles['STRICT']=IOProfile(dialect='PDB', fault_tolerant=False,
                                strict_hydrogens=False, quack_mode=False)
   profiles['SLOPPY']=IOProfile(dialect='PDB', fault_tolerant=True,
-                               strict_hydrogens=False, quack_mode=True)
+                               strict_hydrogens=False, quack_mode=True,
+                               bond_feasibility_check=True)
   profiles['CHARMM']=IOProfile(dialect='CHARMM', fault_tolerant=True,
-                               strict_hydrogens=False, quack_mode=False)
+                               strict_hydrogens=False, quack_mode=False,
+                               bond_feasibility_check=True)
   profiles['DEFAULT']='STRICT'
 
 def _override(val1, val2):