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Commit 58fd0538 authored by Gerardo Tauriello's avatar Gerardo Tauriello
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Added doc for ost.mol.ResNum (was about time).

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...@@ -113,7 +113,7 @@ The Handle Classes ...@@ -113,7 +113,7 @@ The Handle Classes
:param chain_name: Chain identifier, e.g. "A" :param chain_name: Chain identifier, e.g. "A"
:type chain_name: str :type chain_name: str
:param res_num: residue number :param res_num: residue number
:type res_num: mol.ResNum :type res_num: :class:`ResNum`
:returns: A valid :class:`ResidueHandle` if the chain exists and :returns: A valid :class:`ResidueHandle` if the chain exists and
the chain contains a residue of the given residue the chain contains a residue of the given residue
...@@ -131,7 +131,7 @@ The Handle Classes ...@@ -131,7 +131,7 @@ The Handle Classes
:param chain_name: Chain identifier, e.g. "A" :param chain_name: Chain identifier, e.g. "A"
:type chain_name: str :type chain_name: str
:param res_num: residue number :param res_num: residue number
:type res_num: mol.ResNum :type res_num: :class:`ResNum`
:param atom_name: atom name, e.g. CA :param atom_name: atom name, e.g. CA
:type atom_name: str :type atom_name: str
...@@ -367,7 +367,7 @@ The Handle Classes ...@@ -367,7 +367,7 @@ The Handle Classes
Get residue by residue number. See also :attr:`residues` Get residue by residue number. See also :attr:`residues`
:param res_num: residue number :param res_num: residue number
:type res_num: mol.ResNum :type res_num: :class:`ResNum`
:returns: A valid :class:`ResidueHandle` if the chain contains :returns: A valid :class:`ResidueHandle` if the chain contains
a residue with matching residue number, an invalid a residue with matching residue number, an invalid
...@@ -386,7 +386,7 @@ The Handle Classes ...@@ -386,7 +386,7 @@ The Handle Classes
Get atom by residue number and atom name. See also :attr:`atoms` Get atom by residue number and atom name. See also :attr:`atoms`
:param res_num: residue number :param res_num: residue number
:type res_num: mol.ResNum :type res_num: :class:`ResNum`
:param atom_name: atom name, e.g. CA :param atom_name: atom name, e.g. CA
:type atom_name: str :type atom_name: str
...@@ -994,7 +994,7 @@ The View Classes ...@@ -994,7 +994,7 @@ The View Classes
:param chain_name: The chain name :param chain_name: The chain name
:type chain_name: str :type chain_name: str
:param res_num: The residue number :param res_num: The residue number
:type res_num: ResNum or int :type res_num: :class:`ResNum` or :class:`int`
:param atom_name: The name of the atom :param atom_name: The name of the atom
:type atom_name: str :type atom_name: str
:rtype: class:`AtomView` :rtype: class:`AtomView`
...@@ -1597,7 +1597,45 @@ Other Entity-Related Functions ...@@ -1597,7 +1597,45 @@ Other Entity-Related Functions
useful to combine several entities into one. useful to combine several entities into one.
:returns :class:`EntityHandle` :returns :class:`EntityHandle`
Residue Numbering
--------------------------------------------------------------------------------
.. class:: ResNum(num, ins_code='\0')
Number for a residue. The residue number has a numeric part and an (optional)
insertion-code. You can work with this object as if it was an integer and
comparison will look first at the numeric part and then the insertion-code.
All access to existing objects is read-only.
:param num: Numeric part of residue number.
:type num: :class:`int`
:param ins_code: Alpha-numeric part of residue number (optional insertion
code). Only first character kept.
:type ins_code: :class:`str`
.. attribute:: num
Numeric part of residue number.
:type: :class:`int`
.. attribute:: ins_code
Alpha-numeric part of residue number (insertion code). Single character.
:type: :class:`str`
.. method:: GetNum
:returns: :attr:`num`
.. method:: GetInsCode
:returns: :attr:`ins_code`
.. _chaintype: .. _chaintype:
ChainType ChainType
......
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