parser.add_option("-b","--builder",dest="builder",default="HEURISTIC",help="Type of builder used by the progam (either RULE_BASED or HEURISTIC) [default: %default]")
parser.add_option("-c","--compound_library",dest="complib",default="compounds.chemlib",help="Compound library for the RULE_BASED builder (only used if --builder option is set to RULE_BASED, otherwise ignored [default: %default]")
parser.add_option("-q","--query",dest="query",default="",help="Selection query to be highlighted automatically upon loading (only used together with -p option or when a PDB file is loaded, otherwise ignored [default: None]")
parser.add_option("-S","--stereo",dest="try_stereo",default=False,action="store_true",help="try to get a quad-buffer stereo visual")