CI: use make as documented in the wiki

.gitlab-ci.yml

@@ -76,14 +76,15 @@ test:centos7.3:
              -DCMAKE_C_FLAGS='-L${EBROOTLIBPNG}/lib/ -L${EBROOTLIBTIFF}/lib/ -L${EBROOTZLIB}/lib/ -isystem ${EBROOTBOOST}/include -isystem ${EBROOTOPENMM}/include'
              -DCMAKE_CXX_FLAGS='-L${EBROOTLIBPNG}/lib/ -L${EBROOTLIBTIFF}/lib/ -L${EBROOTZLIB}/lib/ -isystem ${EBROOTBOOST}/include -isystem ${EBROOTOPENMM}/include'
              -DCMAKE_EXE_LINKER_FLAGS=" -pthread"
-  - make -j 2
+  - make -j 2 chemdict_tool
   - echo "    ... done building OST."
   - echo "    Building a compound library..."
-  - stage/bin/chemdict_tool create components.cif.gz compounds.chemlib pdb
-    stage/bin/chemdict_tool update ../modules/conop/data/charmm.cif compounds.chemlib charmm
+  - stage/bin/chemdict_tool create components.cif.gz compounds.chemlib pdb -i
+  - stage/bin/chemdict_tool update ../modules/conop/data/charmm.cif compounds.chemlib charmm
   - echo "    ... done building the compound lib."
   - echo "    Building OST with the compound lib..."
   - cmake .. -DCOMPOUND_LIB=compounds.chemlib
+  - make -j 2
   - echo "    ... done building OST with the compound library..."
   - echo "    Running unit tests for OST..."
   - make check