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Verified Commit 9c03a412 authored by Xavier Robin's avatar Xavier Robin
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feat: SCHWED-6059 coverage delta in action

parent b404df35
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......@@ -168,13 +168,20 @@ def _ParseArgs():
action="store_true",
help=("Allow incomplete target ligands."))
parser.add_argument(
"-cd",
"--coverage-delta",
dest="coverage_delta",
default=False,
action="store_true",
help=("Allow incomplete target ligands."))
parser.add_argument(
"-gcm",
"--global-chain-mapping",
dest="global_chain_mapping",
default=False,
action="store_true",
help=("Use a global chain mapping."))
default=0.2,
help=("Coverage delta for partial ligand assignment."))
parser.add_argument(
"-c",
......@@ -363,6 +370,7 @@ def _Process(model, model_ligands, reference, reference_ligands, args):
check_resnames=args.enforce_consistency,
rename_ligand_chain=True,
substructure_match=args.substructure_match,
coverage_delta=args.coverage_delta,
global_chain_mapping=args.global_chain_mapping,
rmsd_assignment=args.rmsd_assignment,
unassigned=args.unassigned,
......
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