optimize Doxygen output for Java

This makes the whole documentation look more like Python code. Qualified
names are now written with "." instead of "::".

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1862 5a81b35b-ba03-0410-adc8-b2c5c5119f08

website/Doxyfile

@@ -34,8 +34,8 @@ INHERIT_DOCS           = YES
 SEPARATE_MEMBER_PAGES  = NO
 TAB_SIZE               = 2
 ALIASES                = 
-OPTIMIZE_OUTPUT_FOR_C  = YES
-OPTIMIZE_OUTPUT_JAVA   = NO
+OPTIMIZE_OUTPUT_FOR_C  = NO
+OPTIMIZE_OUTPUT_JAVA   = YES
 OPTIMIZE_FOR_FORTRAN   = NO
 OPTIMIZE_OUTPUT_VHDL   = NO
 BUILTIN_STL_SUPPORT    = NO
@@ -69,9 +69,9 @@ SORT_BRIEF_DOCS        = NO
 SORT_GROUP_NAMES       = NO
 SORT_BY_SCOPE_NAME     = NO
 GENERATE_TODOLIST      = NO
-GENERATE_TESTLIST      = YES
-GENERATE_BUGLIST       = YES
-GENERATE_DEPRECATEDLIST= YES
+GENERATE_TESTLIST      = NO
+GENERATE_BUGLIST       = NO
+GENERATE_DEPRECATEDLIST= NO
 ENABLED_SECTIONS       = 
 MAX_INITIALIZER_LINES  = 30
 SHOW_USED_FILES        = YES