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schwede
openstructure
Commits
c3da1980
Commit
c3da1980
authored
6 years ago
by
Gerardo Tauriello
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Doc fixes.
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cfe7f18f
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actions/ost-compare-structures
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-5
5 additions, 5 deletions
actions/ost-compare-structures
modules/mol/alg/doc/molalg.rst
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modules/mol/alg/doc/molalg.rst
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actions/ost-compare-structures
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c3da1980
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@@ -502,14 +502,14 @@ def _GetAlignmentsAsFasta(alignments):
def _ReadStructureFile(path, c_alpha_only=False, fault_tolerant=False,
selection=""):
"""Safely read structure file into OST entity.
The functin can read both PDB and mmCIF files.
"""Safely read structure file into OST entities (split by biounit).
The function can read both PDB and mmCIF files.
:param path: Path to the file.
:type path: :class:`str`
:returns:
E
ntit
y
:rtype: :class:`~ost.mol.EntityHandle`
:returns:
list of e
ntit
ies
:rtype:
:class:`list` of
:class:`~ost.mol.EntityHandle`
"""
def _Select(entity):
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modules/mol/alg/doc/molalg.rst
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c3da1980
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@@ -135,7 +135,7 @@ Local Distance Test scores (lDDT, DRMSD)
This function calculates the Local Distance Difference Test, using the same
threshold values as the GDT-HA test (the default set of thresholds used for
the lD
T
T score) (See previous functions). The thresholds are 0.5, 1, 2, and 4
the lD
D
T score) (See previous functions). The thresholds are 0.5, 1, 2, and 4
Angstroms.
The function only compares the input distance list to the first chain of the
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