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schwede
openstructure
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e755be76
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e755be76
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7 years ago
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Rafal Gumienny
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docs: SCHWED-3121 Add lDDTScorer documentation
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modules/mol/alg/doc/molalg.rst
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@@ -539,6 +539,78 @@ Local Distance Test scores (lDDT, DRMSD)
:return: String representation of the lDDTSettings object.
:rtype: :class:`str`
.. class:: lDDTScorer(reference, model, settings)
Object to compute lDDT scores.
Example usage with pre-prepared references.
.. code:: python
import ost
:param references: Sets :attr:`references`
:param model: Sets :attr:`model`
:param settings: Sets :attr:`settings`
.. attribute:: references
A list of reference structures.
:type: list(:class:`~ost.mol.EntityView`)
.. attribute:: model
A model structure.
:type: :class:`~ost.mol.EntityView`
.. attribute:: settings
Settings used to calculate lDDT.
:type: :class:`~ost.mol.alg.lDDTSettings`
.. attribute:: global_dist_list
Global map of residue properties.
:type: :class:`~ost.mol.alg.GlobalRDMap`
.. attribute:: global_score
Global lDDT score.
:type: float
.. attribute:: conserved_contacts
Number of conserved distances.
:type: int
.. attribute:: total_contacts
Number of total distances.
:type:
.. attribute:: local_scores
Local scores.
:type: list(:class:`~ost.mol.alg.lDDTLocalScore`)
.. attribute:: is_valid
Is the calculated score valid?
:type: bool
.. method:: PrintPerResidueStats
Print per-residue statistics.
.. class:: UniqueAtomIdentifier(chain, residue_number, residue_name, atom_name)
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