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Commit ec7ca9da authored by Gerardo Tauriello's avatar Gerardo Tauriello
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SCHWED-3964: fix actions doc layout and examples.

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...@@ -31,7 +31,7 @@ Only model structures are "Molck-ed" in CAMEO. The call to molck is as follows: ...@@ -31,7 +31,7 @@ Only model structures are "Molck-ed" in CAMEO. The call to molck is as follows:
molck \\ molck \\
--complib=<COMPOUND LIB> \\ --complib=<COMPOUND LIB> \\
--rm=hyd,oxt,unk \\ --rm=hyd,oxt,unk,nonstd \\
--fix-ele \\ --fix-ele \\
--map-nonstd \\ --map-nonstd \\
--out=<OUTPUT> \\ --out=<OUTPUT> \\
...@@ -45,7 +45,7 @@ compare-structures as follows: ...@@ -45,7 +45,7 @@ compare-structures as follows:
--reference <REF> \\ --reference <REF> \\
--output output.json \\ --output output.json \\
--molck \\ --molck \\
--remove oxt hyd unk \\ --remove oxt hyd unk nonstd \\
--clean-element-column \\ --clean-element-column \\
--map-nonstandard-residues \\ --map-nonstandard-residues \\
--structural-checks \\ --structural-checks \\
...@@ -243,7 +243,7 @@ def _ParseArgs(): ...@@ -243,7 +243,7 @@ def _ParseArgs():
" * hyd - remove hydrogen atoms\n" " * hyd - remove hydrogen atoms\n"
" * oxt - remove terminal oxygens\n" " * oxt - remove terminal oxygens\n"
" * nonstd - remove all residues not one of the 20\n" " * nonstd - remove all residues not one of the 20\n"
" * standard amino acids\n" " standard amino acids\n"
" * unk - Remove unknown and atoms not following the\n" " * unk - Remove unknown and atoms not following the\n"
" nomenclature\n" " nomenclature\n"
"Defaults to hyd.")) "Defaults to hyd."))
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