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Commit f82d96af authored by Marco Biasini's avatar Marco Biasini
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make seq-id tests compile with gcc 4.3

parent 4ddda29c
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modules/seq/alg/tests/test_sequence_identity.cc
+ 16
− 16
View file @ f82d96af
......@@ -42,18 +42,18 @@ BOOST_AUTO_TEST_CASE(seqid_one)
aln.AddSequence(s2);
Real seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE, 0, 1);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
// check the default sequence indices
seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
// check the default value for reference mode
seqid=alg::SequenceIdentity(aln);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
seqid=alg::SequenceIdentity(aln, alg::RefMode::ALIGNMENT);
BOOST_CHECK_CLOSE(seqid, 100.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(100.0), Real(1e-6));
}
BOOST_AUTO_TEST_CASE(seqid_two)
......@@ -66,18 +66,18 @@ BOOST_AUTO_TEST_CASE(seqid_two)
aln.AddSequence(s2);
Real seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE, 0, 1);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
// check the default sequence indices
seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
// check the default value for reference mode
seqid=alg::SequenceIdentity(aln);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
seqid=alg::SequenceIdentity(aln, alg::RefMode::ALIGNMENT);
BOOST_CHECK_CLOSE(seqid, 50.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(50.0), Real(1e-6));
}
BOOST_AUTO_TEST_CASE(seqid_three)
......@@ -90,18 +90,18 @@ BOOST_AUTO_TEST_CASE(seqid_three)
aln.AddSequence(s2);
Real seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE, 0, 1);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
// check the default sequence indices
seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
// check the default value for reference mode
seqid=alg::SequenceIdentity(aln);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
seqid=alg::SequenceIdentity(aln, alg::RefMode::ALIGNMENT);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
}
BOOST_AUTO_TEST_CASE(seqid_empty)
......@@ -114,18 +114,18 @@ BOOST_AUTO_TEST_CASE(seqid_empty)
aln.AddSequence(s2);
Real seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE, 0, 1);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
// check the default sequence indices
seqid=alg::SequenceIdentity(aln, alg::RefMode::LONGER_SEQUENCE);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
// check the default value for reference mode
seqid=alg::SequenceIdentity(aln);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
seqid=alg::SequenceIdentity(aln, alg::RefMode::ALIGNMENT);
BOOST_CHECK_CLOSE(seqid, 0.0, 1e-6);
BOOST_CHECK_CLOSE(seqid, Real(0.0), Real(1e-6));
}
......
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