git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2071 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2070 5a81b35b-ba03-0410-adc8-b2c5c5119f08

disabling wiggle code for the moment
added option definition for option COMPOUND_LIB for master CMakeLists.txt 
updated win32 build config


git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2069 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2068 5a81b35b-ba03-0410-adc8-b2c5c5119f08

some tinkering around with the offscreen rendering again, half stable only
added automatic centering on first GfxObj that is added to the scene
added temporary interface to the shader api until we have proper material params
added direct char param for python Residue.SetSecStructure (too many types can be evil, too)




git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2067 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2066 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2065 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2064 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2062 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2061 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2060 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2057 5a81b35b-ba03-0410-adc8-b2c5c5119f08

removed sequential atom list functionality (superseded by atom index)
added atom index (automatically incremented during creation and loading)
coord group uses index sorted atom list instead on relying on the atom order in entity
added coordinate format mae import
added various debug output


git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2056 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2054 5a81b35b-ba03-0410-adc8-b2c5c5119f08

based widget to main area)


git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2053 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2052 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2051 5a81b35b-ba03-0410-adc8-b2c5c5119f08

- Size of TableElements

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2050 5a81b35b-ba03-0410-adc8-b2c5c5119f08

 - Fixed loading of surfaces

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2049 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2048 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2047 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2046 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2045 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2044 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2043 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2042 5a81b35b-ba03-0410-adc8-b2c5c5119f08

No comment

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2041 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2040 5a81b35b-ba03-0410-adc8-b2c5c5119f08

Particularly, split out the common part of ANISOU, HETATM and
ATOM parsing into a separate method. Switch the line processing
foo to use StringRef, which makes it look much simpler, plus
gives some speed improvements as we avoid copying around
std::strings.

This should have been done a long, long time ago.

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2039 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2038 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2037 5a81b35b-ba03-0410-adc8-b2c5c5119f08

Potentially also fixes compilation on Win32

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2036 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2035 5a81b35b-ba03-0410-adc8-b2c5c5119f08

added high-level SetOutline interface to gfx obj, added outline func to gfx entity
fixed cylindrical helix and flat strand mode (again, perhaps last time)
synchronized/fixed ost imports in init_cl.py and base/__init__.py
tweaked multisample initialization on QGLWidget
added several shortcut properties to gfx::Scene in python wrapper
added query aliases for cname (chain) and rtype=ext (rtype=strand)





git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2034 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2033 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2032 5a81b35b-ba03-0410-adc8-b2c5c5119f08

 - Added Level Infos for (glyoxalase and thrombin)

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2031 5a81b35b-ba03-0410-adc8-b2c5c5119f08

 - Allow adding custom menupoints

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2030 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2029 5a81b35b-ba03-0410-adc8-b2c5c5119f08

 - Loading selection (for example: 1dng[rname=LYS])

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2028 5a81b35b-ba03-0410-adc8-b2c5c5119f08