RuleBased conop is an experimental new interface for processing
structures in the conop module. The class exposes a single method
Process with takes care of the complete conop procedure. There are
still a few methods missing, they will be added shortly.

corrected in-code occurences of mol/transform.hh, mol::Transform, and mol.Transform to geom equivalents

The mol/transform.hh header still exists and typedefs geom.Transform to mol.Transform; however, including it
will give you a deprecation warning; please observe these warning in your code and change your Transforms to
geom::

The Transform class was moved from the mol module to the geom module. A typedef
was put into the mol namespace in C++, and a similar alias was put into the
mol python module, with an added deprecation warning.

The idea was to speed up the build process by removing several
unneccessary targets and stage all headers in one go. However,
for some reason, CMake does not think that's a good idea. Only
parts of the headers get staged

The segfault was showing up when using the sequence viewer in an
application without a GostyApp instance.

There is no short-circuit logic in Python and division by zero gets
raised when abs(rr)==0.

folder because it breaks the make clean command

and a function GaussianSmooth is added

fixed some DLLEXPORTs for exceptions
based ost:Error on std::runtime_error (avoids string member in ost::Error)

Output in file. Choice of output path and filename. Cutom comp lib location.