RuleBased conop is an experimental new interface for processing
structures in the conop module. The class exposes a single method
Process with takes care of the complete conop procedure. There are
still a few methods missing, they will be added shortly.

folder because it breaks the make clean command

added cmake option to set hidden visibility for gcc compiles; fixed several missing visibility declarations

Fixes BZDNG-385

Mainly Marco's work

to check for breaking of the in_sequence property.
Added an SetInSequence() function to the ChainHandle to check and update
the in_sequence property

1. Option to move libexec to lib/openstructure/libexec
2. Gosty moved to libexec

Version is now defined only in the CMakeList.txt at the top level. Everything in OpenStructure picks it up from there

The main purpose of this commit is to test the jira/git
integration, so I'm just randomly mentioning a bug report
that exists in the develop instance of jira: BZDNG-9.

Any project dependent on OST will also need to do the boost initialization, therefore moving it to a macro avoids code duplication.

changed cmake scripts to allow building as subproject / moved common configuration from startup scripts to separate script

Added support for Homebrew MacOSX packaging system and for Eigen3 (in Eigen2 compatibility mode)

Added support for Homebrew MacOSX packaging system and for Eigen3 (in Eigen2 compatibility mode)

This is very useful when deploying a single program building
on the C++ libraries only.

ENABLE_GUI not ENABLE_UI


git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2701 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2594 5a81b35b-ba03-0410-adc8-b2c5c5119f08

git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2448 5a81b35b-ba03-0410-adc8-b2c5c5119f08