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Created with Raphaël 2.2.028Jul272625131211658Jun32124May181710954228Apr27212019141312821Feb27Jan26252420192Dec29Nov2221191726Oct16Sep1518Aug30Jul15130Jun1710May76530Apr24Mar20Feb936Jan530Dec111018Nov1098654228Oct27252115131076517Sep28Aug20631Jul3027242322212018171615131097225Jun2218157218May131127Apr20171626Mar2319161163226Feb2524201918171413121110765329Jan171413107230Dec201918171698653229Nov2827262523212015141323Oct144330Sep2523328Aug12510Jul942124Jun191817141312331May29272423222016151413924Apr179320Mar1514625Feb2019171411765432130Jan2422161514131110lDDT: simplify handling of views attached to sequencesForce SDF writer to write elements with capital first char and rest lower caselDDT: docu updateslDDT: give more fine grained control over alignment similarity measureslDDT: expose alignment parameters to ChainMapper constructorlDDT: reorder chain mapping codelDDT: speedupsbugfixlDDT: bugfixlDDT: cleanuplDDT: enable residue number based alignments in chain mappinglDDT: Implement chain mapping logic based on rigid superpositionsAdd basic transformation and comparison logic to geom.Vec3ListlDDT: docstring updatelDDT: bugfixlDDT: recactor block based greedy chain mappinglDDT: bugfixlDDT: bugfixlDDT: bugfixlDDT: bugfixlDDT: bugfixlDDT: typolDDT: Getter for number of possible chain mappingslDDT: simplifylDDT: new chain mapping greedy strategy: blocklDDT: chain mapping bugfixlDDT: implement optimization logic to reduce risk of local optimalDDT: bugfixlDDT: Introduce selectable strategies for seed picking in greedy extensionlDDT: Add greedy heuristic to chain mapping to reduce complexitylDDT: add lDDT based chain mapping using cachinglDDT: bugfixlDDT: Functions to compute number of possible chain mappingslDDT: add lDDT based chain mapping functionality - work in progresslDDT: bugfixenable nucleotide as query prop => prot.Select("nucleotide=true")export is_nucleotide attribute for residuesadd MATCH and NUC44 substitution matricesintroduce IDENTITY substitution matrixlDDT: generalize calpha flag to also deal with nucleotides (C3' as ref atom)