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Created with Raphaël 2.2.018Aug30Jul15130Jun1710May76530Apr24Mar20Feb936Jan530Dec111018Nov1098654228Oct27252115131076517Sep28Aug20631Jul3027242322212018171615131097225Jun2218157218May131127Apr20171626Mar2319161163226Feb2524201918171413121110765329Jan171413107230Dec201918171698653229Nov2827262523212015141323Oct144330Sep2523328Aug12510Jul942124Jun191817141312331May29272423222016151413924Apr179320Mar1514625Feb2019171411765432130Jan24221615141311109818Dec13328Nov222120923Oct326Sep2413106514Aug13109731Jul201918106229Jun115425May2327Aprupdate CHANGELOGadd support for AAindex database (Kawashima et al., 2000)process all _struct_conf_type.id in mmcif_pdbx_v50.dicDocumentation fixPDBize: do not put chains marked as 'polymer' in the ligand chain.update CHANGELOGremove GUI support in DockerfileFix sciCORE GitLab URL in DockerfileInitial version of mmseqs2 bindingHHblits binding needs to set abspath to filename variablemove stuff out of header fileuse integer packing instead of storing outliers in separate vecshacks to reduce omf file sizespeedupsinitial commit for experimental binary file formatpython3: fix TypeError: '<' not supported between instances of 'dict' and 'dict'fix namespacemove PagedArray datastructure to base modulecheck for valid data stream when reading PagedArrayExtend the documentation of InsertChainavoid atan2(0.0, 0.0) in Dihedral::SetAngleICSNo need for special treatment. Gets handled fine at a later stage.avoid capture_output kwarg in subprocess.run as it would require Python 3.7Fallback if dssp binding is used with dssp 4 (https://github.com/PDB-REDO/dssp)correct setup of testing datamake img.base.test_image unit test more permissivemake mol.mm.simulation unit test more permissiveClarify that it's to keep ICS up-to-date and not lazy eval.Clarify to use XCSEditor to access EditorBase functionsFix Sphinx hyperlink reference syntaxdoc: add undocumented functions/classes/objects in seq.algAllow first argument to SequenceIdentity to be namedMerge branch 'master' into developMerge branch 'release-2.2.0'2.2.02.2.0Update container base image from ubuntu:18.04 to ubuntu:20.04fix: cleanup temp file also in case DSSP failed.Update macOS installation instructionsUpdate version to 2.2.02.2.0-rc2.2.0-rcadd newline when bumping version in singularity filesilence CMake warnings