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Created with Raphaël 2.2.023Aug22191816158432129Jul28272625131211658Jun32124May181710954228Apr27212019141312821Feb27Jan26252420192Dec29Nov2221191726Oct16Sep1518Aug30Jul15130Jun1710May76530Apr24Mar20Feb936Jan530Dec111018Nov1098654228Oct27252115131076517Sep28Aug20631Jul3027242322212018171615131097225Jun2218157218May131127Apr20171626Mar2319161163226Feb2524201918171413121110765329Jan171413107230Dec201918171698653229Nov2827262523212015141323Oct144330Sep2523328Aug12510Jul942124Jun191817141312331May29272423222016151413924Apr179320Mar1514625Feb20191714117654321don't use deprecated parser moduleremove unnecessary includesilence Qt compiler warnings - default constructors instead of 0 for flagssilence Qt warning - QPixmapCache::find wants pointer instead of refsilence Qt warning - QFontMetric.width() => QFontMetric.horizontalAdvance()silence QWheelEvent deprecation warning - delta() => angleDelta().y()silence QT warning: Qt::MidButton => Qt::MiddleButtonsilence deprecation warnings on int types - e.g. uint16 => uint16_tsilence deprecation warning - boost bindlDDT: Merge the two naive chain mapping functions into one: GetNaivelDDTMappinglDDT: extend rigid superposition based mapping capabilitiesexport geom.Mat4 copy constructorlDDT: use BLOSUM62 as default for sequence alignments in chain mappinglDDT: more strict gap penalties in chain mapping alignments (BLAST defaults)lDDT: slight change of chain mapping default paramslDDT: limit max number of possible chain mappingslDDT: refactor block strategy in greedy chain mappinglDDT: introduce minimal chain lengths in chain mappingmake warning in AlignToSEQRES more informative, i.e. include chain namethrow error when trying to write empty sequence in FASTA filelDDT: bugfixlDDT: alter chem mapping strategyMore descriptive error in io.LoadSequenceList()lDDT: enable iterative SVD superpositiondocu updatesdocu updatesuse latest external TM Align code for WrappedTMAlign (SCHWED-5224)bugfix: SCHWED-5469bugfix: correct chem class in standard compoundsbugfix: correct one letter codes in standard compoundslDDT: unit test updatecorrect name blaminglDDT: first chain mapping unit testsKeep compound library up to date for structure iolDDT: simplify handling of views attached to sequencesForce SDF writer to write elements with capital first char and rest lower caselDDT: docu updateslDDT: give more fine grained control over alignment similarity measureslDDT: expose alignment parameters to ChainMapper constructorlDDT: reorder chain mapping code