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openstructure
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b81217754cccc48148b633fb1f1f3e92f65b89a6
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cmake_boost_refactor
data_viewer
develop
protected
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mmtf
no_boost_filesystem
non-orthogonal-maps
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SCHWED-4835: Create bonds for entity branch on per atom pair basis
SCHWED-4835: Create bonds for entityt branch links
Update macOS installation instructions
SCHWED-4696: Unit testing pdbx_entity_branch parsing
SCHWED-4696: Read pdbx_entity_branch for a better chain description
SCHWED-4696: Mention new branched chain type in documentation.
SCHWED-4696: Allow 'branched' chain(types)
document default values in profile building
use subprocess.run instead of Popen
Fixed spelling
A hint for macOS issues.
Update compilattion instructions for macOS
Move secondary structure assignment in a3m building to separate function
Bugfix patch of HHblits 3.2 module on sciCORE cluster changes output
avoid hardcoded evalue thresh when building hhblits profile
give missing argument a default value to make example code run through...
load sequence profiles from strings
ignore columns where both sequences have a gap - an error was thrown in such cases
Enable documentation parser to deal with unicode
Update macOS installation instructions
wrap data extracted from linear dbs in single objects
Make data extraction helper specific to their tasks: DisCo and GMQE
Added new ChemClass observed in HSQ
Merge branch 'develop' into hhblits3
allow to extract template info from several LinearPositionContainer at once
Merge branch 'develop' into hhblits3
set neff value when generating sub-profile
Update CHANGELOG.txt
Use the newer voronota implementation as default in CAD-score binding
replaced pyuic4 call with pyuic5 (QT5 related)
Documentation for HMM functionality
allow to adapt parameter defaults when adding transition pseudo counts
give control over tau parameter estimation in AddAAPseudoCounts
allow to adapt parameter defaults in HMMScore
move null model pseudo counts into separate function
add pseudo counts according to Angermueller et al. 2012
Python export for HMM algorithm
hook up hmm algorithms in build system
algorithm that calculates an HMM-HMM alignment score the hhblits way
Algorithms to add pseudo counts to ProfileHandle objects which contain HMM information
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