Commit 57ab76aa authored by Bienchen's avatar Bienchen
Browse files

Removed debug output

parent a7bc08a2
......@@ -176,9 +176,9 @@ def execute_promod(model_path, scratch_path, trg_seq, model_ost_ent):
if __name__ == "__main__":
in_dir = "cameo_benchmark" # pylint: disable=invalid-name
out_dir = "promodII_models" # pylint: disable=invalid-name
scratch_dir = "scratch" # pylint: disable=invalid-name
in_dir = "cameo_benchmark"
out_dir = "promodII_models"
scratch_dir = "scratch"
if not os.path.exists(out_dir):
os.makedirs(out_dir)
if not os.path.exists(scratch_dir):
......@@ -186,12 +186,11 @@ if __name__ == "__main__":
targets = set(
f[:6] for f in os.listdir(in_dir)
) # pylint: disable=invalid-name
)
sb_i = 0 # pylint: disable=invalid-name
modelling_time = 0.0 # pylint: disable=invalid-name
modelling_time = 0.0
for t in sorted(targets):
print("TARGET", t)
#print("TARGET", t)
tpl_path = os.path.join(in_dir, t + "_tpl.pdb")
aln_path = os.path.join(in_dir, t + "_aln.fasta")
out_path = os.path.join(out_dir, t + ".pdb")
......@@ -206,8 +205,5 @@ if __name__ == "__main__":
aln.GetSequence(0).GetGaplessString(),
rawmodel.model,
)
sb_i += 1
if sb_i == 1:
break
print("full modelling time: ", modelling_time)
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