Included plot scripts for manuscript

plot_scripts/Fig3/no_and_OOF_uAUGS_MTtrans.py

plot_scripts/Fig3/no_and_OOF_uAUGS_TranslateLLM.py

plot_scripts/Fig3/no_and_OOF_uAUGS_framepool.py

plot_scripts/Fig3/no_and_OOF_uAUGS_optimus5p.py

plot_scripts/Fig3/plot_performance_rotated.py

plot_scripts/Fig4/CDFs_clinvar.py

plot_scripts/Fig4/TranslateLLM_opt50_to_variants.py

plot_scripts/Fig4/barplot_clinvar.py

plot_scripts/Fig4/optimus5p_opt50_to_variants.py

plot_scripts/SuppFig1/CDS_lengths_human_transcripts.tsv

..._scripts/SuppFig1/all_rna_on_cds_reads_HEK293_alexaki.tsv

plot_scripts/SuppFig1/correlation_replicates_STAR.py

plot_scripts/SuppFig1/correlation_replicates_riboseq_TPMs.py

plot_scripts/SuppFig1/plot_replicates_TIN_score_threshold.py

plot_scripts/SuppFig1/rep1/TE.tsv

plot_scripts/SuppFig1/rep1/TIN_score.tsv

...SuppFig1/rep1/all_rna_on_cds_reads_HEK293_alexaki_WT1.tsv

plot_scripts/SuppFig1/rep1/init_effs.tsv

plot_scripts/SuppFig1/rep2/TE.tsv

plot_scripts/SuppFig1/rep2/TIN_score.tsv