first commit

...training_data/clinvar_mutated_sequences_with_metadata.tsv

HEK293_training_data/init_effs_HEK293_endogenous.tsv

HEK293_training_data/opt100_nonseq_feat.tsv

HEK293_training_data/scalers/GC_content_scaler.gz

HEK293_training_data/scalers/UTR_length_scaler.gz

HEK293_training_data/scalers/log_ORF_length_scaler.gz

...ining_data/scalers/normalized_5p_folding_energy_scaler.gz

HEK293_training_data/scalers/number_exons_scaler.gz

HEK293_training_data/scalers/number_inframe_uAUGs_scaler.gz

HEK293_training_data/scalers/number_outframe_uAUGs_scaler.gz

HEK293_training_data/scalers/number_uAUGs_scaler.gz

HEK293_training_data/scalers/output_scaler.gz

requirements.txt

tl_TranslateLLM_endogenous/end2end_prediction.py

tl_TranslateLLM_endogenous/predict_clinvar.py

tl_TranslateLLM_endogenous/tl_TranslateLLM_HEK293.h5

tl_TranslateLLM_endogenous/tl_TranslateLLM_end_HEK293.py

training_data_preprocessing/MRPA_data/add_metadata.py

...ning_data_preprocessing/endogenous_data/.pybiomart.sqlite

training_data_preprocessing/endogenous_data/calc_TE.py