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Update Read sequencer, cDNA generator
authored
Aug 08, 2023
by
Mate Balajti
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## [cDNA generator](https://git.scicore.unibas.ch/zavolan_group/tools/cdna-generator)
## [cDNA generator](https://git.scicore.unibas.ch/zavolan_group/tools/cdna-generator)
*
License: MIT
*
License: MIT
*
This tool needs some work
*
`setup.py`
available, tool can be installed with
`pip install .`
and is executable, CLI arguments are available but CLI doesn't seem to work yet
*
14 unresolved threads in review MR, but some seem to have been solved
*
There is one open MR that failed pipeline
*
CI is partially available, tests run
*
Docker image available
## [Terminal fragment selector](https://git.scicore.unibas.ch/zavolan_group/tools/terminal-fragment-selector)
## [Terminal fragment selector](https://git.scicore.unibas.ch/zavolan_group/tools/terminal-fragment-selector)
*
License: MIT
*
License: MIT
*
Two branches:
`main`
and
`review`
, only one unresolved thread (minor) on review MR
*
Two branches:
`main`
and
`review`
*
No open issues
*
No open issues
, only one unresolved thread (minor) on review MR
*
Tool can be installed with
`pip install .`
and is executable, I think it works as intended
*
Tool can be installed with
`pip install .`
and is executable, I think it works as intended
*
CLI and tests work, CI workflow is available and works
*
CLI and tests work, CI workflow is available and works
## [Read sequencer](https://git.scicore.unibas.ch/zavolan_group/tools/read-sequencer)
## [Read sequencer](https://git.scicore.unibas.ch/zavolan_group/tools/read-sequencer)
*
License: MIT
*
License: MIT
*
Three branches:
`main`
,
`review`
and
`seq_generator_implementation`
for macOS implementation
*
One open issue related to nextflow implementation, review MR has 2 minor unresolved threads
*
Tool can be installed with
`pip install .`
and is executable
*
CLI and tests work, CI workflow is available and works
*
Docker image available
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