Skip to content
Snippets Groups Projects
Normal view Permalink
samples.tsv 1.07 KiB
Newer Older
Alex Kanitz's avatar
Refactor LabKey to Snakemake script  
Alex Kanitz committed
1 2 3 
sample	seqmode	fq1	index_size	kmer	fq1_3p	fq1_5p	organism	gtf	genome	sd	mean	multimappers	soft_clip	pass_mode	libtype	fq1_polya_3p	fq1_polya_5p	kallisto_directionality	alfa_directionality	alfa_plus	alfa_minus	fq2	fq2_3p	fq2_5p	fq2_polya_3p	fq2_polya_5p
synthetic_10_reads_paired_synthetic_10_reads_paired	pe	../input_files/project1/synthetic.mate_1.fastq.gz	75	31	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	100	250	10	EndToEnd	None	A	AAAAAAAAAAAAAAAAA	XXXXXXXXXXXXXXXXX	--fr	fr-firststrand	str1	str2	../input_files/project1/synthetic.mate_2.fastq.gz	AGATCGGAAGAGCGT	XXXXXXXXXXXXX	XXXXXXXXXXXXXXXXX	TTTTTTTTTTTTTTTTT
synthetic_10_reads_mate_1_synthetic_10_reads_mate_1	se	../input_files/project2/synthetic.mate_1.fastq.gz	75	31	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	100	250	10	EndToEnd	None	A	AAAAAAAAAAAAAAAAA	XXXXXXXXXXXXXXXXX	--fr	fr-firststrand	str1	str2	XXXXXXXXXXXXX	XXXXXXXXXXXXX	XXXXXXXXXXXXX	XXXXXXXXXXXXX	XXXXXXXXXXXXX