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samples_alfa.tsv 1.36 KiB
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Alex Kanitz's avatar
Refactor LabKey to Snakemake script  
Alex Kanitz committed
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sample	seqmode	fq1	index_size	kmer	fq2	fq1_3p	fq1_5p	fq2_3p	fq2_5p	organism	gtf	genome	sd	mean	multimappers	soft_clip	pass_mode	libtype	kallisto_directionality	fq1_polya	fq2_polya	alfa_directionality	alfa_plus	alfa_minus
paired_end_R1_on_plus_sense	pe	XXXXXXXXXXXXX	75	31	XXXXXXXXXXXXX	GATCGGAAGAGCACA	XXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/quick_start.gtf	XXXXXXXXXXXXX	100	250	10	EndToEnd	None	A	--fr	AAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTT	fr-firststrand	str1	str2
paired_end_R1_on_plus_antisense	pe	XXXXXXXXXXXXX	75	31	XXXXXXXXXXXXX	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/quick_start.gtf	XXXXXXXXXXXXX	100	250	10	EndToEnd	None	A	--rf	AAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTT	fr-secondstrand	str2	str1
paired_end_R1_on_minus_sense	pe	XXXXXXXXXXXXX	75	31	XXXXXXXXXXXXX	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/quick_start.gtf	XXXXXXXXXXXXX	100	250	10	EndToEnd	None	A	--fr	AAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTT	fr-firststrand	str1	str2
paired_end_R1_on_minus_antisense	pe	XXXXXXXXXXXXX	75	31	XXXXXXXXXXXXX	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/quick_start.gtf	XXXXXXXXXXXXX	100	250	10	EndToEnd	None	A	--rf	AAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTT	fr-secondstrand	str2	str1