rule_graph.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<!-- 1&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<!-- 2&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="261" y="-87.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>3&#45;&gt;0</title>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="483" y="-87.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="527" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M729.5,-180C729.5,-180 628.5,-180 628.5,-180 622.5,-180 616.5,-174 616.5,-168 616.5,-168 616.5,-156 616.5,-156 616.5,-150 622.5,-144 628.5,-144 628.5,-144 729.5,-144 729.5,-144 735.5,-144 741.5,-150 741.5,-156 741.5,-156 741.5,-168 741.5,-168 741.5,-174 735.5,-180 729.5,-180"/>
<text text-anchor="middle" x="679" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="853" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="1050" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>8&#45;&gt;0</title>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M300.5,-180C300.5,-180 199.5,-180 199.5,-180 193.5,-180 187.5,-174 187.5,-168 187.5,-168 187.5,-156 187.5,-156 187.5,-150 193.5,-144 199.5,-144 199.5,-144 300.5,-144 300.5,-144 306.5,-144 312.5,-150 312.5,-156 312.5,-156 312.5,-168 312.5,-168 312.5,-174 306.5,-180 300.5,-180"/>
<text text-anchor="middle" x="250" y="-159.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="384" y="-159.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 10&#45;&gt;4 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;4</title>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="464" y="-231.5" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 11&#45;&gt;5 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;5</title>
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<!-- 11&#45;&gt;7 -->
<g id="edge15" class="edge">
<title>11&#45;&gt;7</title>
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<!-- 11&#45;&gt;9 -->
<g id="edge19" class="edge">
<title>11&#45;&gt;9</title>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<!-- 12&#45;&gt;5 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;5</title>
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<!-- 12&#45;&gt;6 -->
<g id="edge14" class="edge">
<title>12&#45;&gt;6</title>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<!-- 13&#45;&gt;6 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;6</title>
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<!-- 13&#45;&gt;8 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;8</title>
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<!-- 13&#45;&gt;10 -->
<g id="edge21" class="edge">
<title>13&#45;&gt;10</title>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#59d856" stroke-width="2" d="M961.5,-252C961.5,-252 864.5,-252 864.5,-252 858.5,-252 852.5,-246 852.5,-240 852.5,-240 852.5,-228 852.5,-228 852.5,-222 858.5,-216 864.5,-216 864.5,-216 961.5,-216 961.5,-216 967.5,-216 973.5,-222 973.5,-228 973.5,-228 973.5,-240 973.5,-240 973.5,-246 967.5,-252 961.5,-252"/>
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<!-- 14&#45;&gt;7 -->
<g id="edge16" class="edge">
<title>14&#45;&gt;7</title>
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<!-- 14&#45;&gt;8 -->
<g id="edge18" class="edge">
<title>14&#45;&gt;8</title>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<!-- 15&#45;&gt;9 -->
<g id="edge20" class="edge">
<title>15&#45;&gt;9</title>
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<!-- 15&#45;&gt;10 -->
<g id="edge22" class="edge">
<title>15&#45;&gt;10</title>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
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<!-- 16&#45;&gt;11 -->
<g id="edge23" class="edge">
<title>16&#45;&gt;11</title>
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<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
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<!-- 17&#45;&gt;13 -->
<g id="edge24" class="edge">
<title>17&#45;&gt;13</title>
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