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samples.tsv 1.1 KiB
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BIOPZ-Katsantoni Maria's avatar
get Snakemake input from LabKey API
BIOPZ-Katsantoni Maria committed
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sample	seqmode	fq1	index_size	kmer	fq2	fq1_3p	fq1_5p	fq2_3p	fq2_5p	organism	gtf	gtf_filtered	genome	tr_fasta_filtered	sd	mean	multimappers	soft_clip	pass_mode	libtype	kallisto_directionality	fq1_polya	fq2_polya
synthetic_10_reads_paired_synthetic_10_reads_paired	paired_end	../input_files/project1/synthetic.mate_1.fastq.gz	75	31	../input_files/project1/synthetic.mate_2.fastq.gz	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	../input_files/homo_sapiens/transcriptome.fa	100	250	10	EndToEnd	None	A	--fr	AAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTT
synthetic_10_reads_mate_1_synthetic_10_reads_mate_1	single_end	../input_files/project2/synthetic.mate_1.fastq.gz	75	31	XXXXXXXXXXXXX	AGATCGGAAGAGCACA	XXXXXXXXXXXXX	XXXXXXXXXXXXX	XXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	../input_files/homo_sapiens/transcriptome.fa	100	250	10	EndToEnd	None	A	--fr	AAAAAAAAAAAAAAAAA	XXXXXXXXXXXXX