cluster.json

{
  "__default__" :
  {
    "queue": "6hours",
    "time": "01:00:00",
    "threads": "1",
    "mem": "4G",
    "name": "{rule}.{wildcards}",
    "out": "$PWD/logs/cluster_log/{rule}.{wildcards}-%j-%N.out"
  },
  "generate_segemehl_index_other_RNAs":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"50G"
  },
  "map_to_other_RNAs":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"50G"
  },
  "index_genome_STAR":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"75G"
  },
  "align_reads_STAR":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"75G"
  },
  "salmon_quant":
  {
    "time": "02:00:00",
    "threads":"6",
    "mem":"32G"
  },
  "calculate_TIN_scores":
  {
    "time": "06:00:00",
    "threads":"8",
    "mem":"32G"
  }
}