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Alex Kanitz authored
- replaces existing larger libraries and annotations in test cases `test_create_dag_chart` and `test_integration_workflow` - adds the following new test files: - `chr1-10000-20000.fa`: artificial chromosome of length 10'000 (based on human chromosome 1) - `chr1-10000-20000.gtf`: matching gene annotation file with two gene and three multi-exon transcripts entries - `chr1-10000-20000.transcripts.fa`: sequences of the transcripts listed in the gene annotation file - `synthetic.mate_?.fastq.gz`: 10 read pairs randomly sampled from the genic regions of the artificial chromosome - `synthetic.*.bed`: BED files with expected alignments for each read; names of overlapping genes are specified in a 7th column - updates file paths in the relevant sample tables - extends and updates checksum checking of result files in CI/CD pipeline
Alex Kanitz authored- replaces existing larger libraries and annotations in test cases `test_create_dag_chart` and `test_integration_workflow` - adds the following new test files: - `chr1-10000-20000.fa`: artificial chromosome of length 10'000 (based on human chromosome 1) - `chr1-10000-20000.gtf`: matching gene annotation file with two gene and three multi-exon transcripts entries - `chr1-10000-20000.transcripts.fa`: sequences of the transcripts listed in the gene annotation file - `synthetic.mate_?.fastq.gz`: 10 read pairs randomly sampled from the genic regions of the artificial chromosome - `synthetic.*.bed`: BED files with expected alignments for each read; names of overlapping genes are specified in a 7th column - updates file paths in the relevant sample tables - extends and updates checksum checking of result files in CI/CD pipeline