fix: Renamed samples_concat.tsv to samples.multiple_lanes.tsv. Renamed rows...
fix: Renamed samples_concat.tsv to samples.multiple_lanes.tsv. Renamed rows with split with the same name as the other test samples, so that I do not change the tests (md5 and sunch). Removed the one lane samples. Created config that uses this tsv file
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- .gitlab-ci.yml 1 addition, 0 deletions.gitlab-ci.yml
- Snakefile 129 additions, 60 deletionsSnakefile
- tests/input_files/config.mutliple_lanes.yml 12 additions, 0 deletionstests/input_files/config.mutliple_lanes.yml
- tests/input_files/pe_lane2/synthetic_split_lane2.mate_2.fastq.gz 0 additions, 0 deletions...nput_files/pe_lane2/synthetic_split_lane2.mate_2.fastq.gz
- tests/input_files/samples.multiple_lanes.tsv 5 additions, 0 deletionstests/input_files/samples.multiple_lanes.tsv
- tests/input_files/samples_concat.tsv 0 additions, 7 deletionstests/input_files/samples_concat.tsv
- tests/test_integration_workflow_multiple_lanes/expected_output.md5 108 additions, 0 deletions...t_integration_workflow_multiple_lanes/expected_output.md5
- tests/test_integration_workflow_multiple_lanes/test.local.sh 81 additions, 0 deletionstests/test_integration_workflow_multiple_lanes/test.local.sh
- tests/test_integration_workflow_multiple_lanes/test.slurm.sh 93 additions, 0 deletionstests/test_integration_workflow_multiple_lanes/test.slurm.sh
- workflow/rules/paired_end.snakefile.smk 72 additions, 21 deletionsworkflow/rules/paired_end.snakefile.smk
- workflow/rules/single_end.snakefile.smk 72 additions, 22 deletionsworkflow/rules/single_end.snakefile.smk
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