Merge branch 'alfa' into 'master'
Alfa integration See merge request zavolan_group/pipelines/rnaseqpipeline!41
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- .gitignore 1 addition, 0 deletions.gitignore
- .gitlab-ci.yml 1 addition, 0 deletions.gitlab-ci.yml
- Snakefile 219 additions, 3 deletionsSnakefile
- images/dag_test_workflow.svg 506 additions, 322 deletionsimages/dag_test_workflow.svg
- images/rule_graph.svg 366 additions, 240 deletionsimages/rule_graph.svg
- scripts/labkey_to_snakemake.py 1 addition, 0 deletionsscripts/labkey_to_snakemake.py
- tests/input_files/config.yaml 1 addition, 0 deletionstests/input_files/config.yaml
- tests/input_files/config_alfa.yaml 9 additions, 0 deletionstests/input_files/config_alfa.yaml
- tests/input_files/homo_sapiens/annotation.gtf 2 additions, 2 deletionstests/input_files/homo_sapiens/annotation.gtf
- tests/input_files/homo_sapiens/quick_start.gtf 6 additions, 0 deletionstests/input_files/homo_sapiens/quick_start.gtf
- tests/input_files/samples_alfa.tsv 5 additions, 0 deletionstests/input_files/samples_alfa.tsv
- tests/test_alfa/expected_output.md5 30 additions, 0 deletionstests/test_alfa/expected_output.md5
- tests/test_alfa/results/paired_end/paired_end_R1_on_minus_antisense/map_genome/paired_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions...d_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam
- tests/test_alfa/results/paired_end/paired_end_R1_on_minus_antisense/map_genome/paired_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions...d_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam.bai
- tests/test_alfa/results/paired_end/paired_end_R1_on_minus_sense/map_genome/paired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions...aired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam
- tests/test_alfa/results/paired_end/paired_end_R1_on_minus_sense/map_genome/paired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions...d_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam.bai
- tests/test_alfa/results/paired_end/paired_end_R1_on_plus_antisense/map_genome/paired_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions...ed_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam
- tests/test_alfa/results/paired_end/paired_end_R1_on_plus_antisense/map_genome/paired_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions...nd_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam.bai
- tests/test_alfa/results/paired_end/paired_end_R1_on_plus_sense/map_genome/paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions...paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam
- tests/test_alfa/results/paired_end/paired_end_R1_on_plus_sense/map_genome/paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions...ed_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam.bai
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