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Commit 1f9ca7c2 authored by BIOPZ-Gypas Foivos's avatar BIOPZ-Gypas Foivos
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Merge branch 'feature/biocontainers_merge_kallisto' into 'dev'

Add biocontainers image for merge_kallisto.R

See merge request !86
parents 3bc92be6 6ded6ada
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1 merge request!86Add biocontainers image for merge_kallisto.R
Pipeline #12753 passed
......@@ -944,7 +944,7 @@ rule kallisto_merge_genes:
threads: 1
singularity:
"docker://zavolab/merge_kallisto:0.6"
"docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell:
"(merge_kallisto.R \
......@@ -1025,7 +1025,7 @@ rule kallisto_merge_transcripts:
threads: 1
singularity:
"docker://zavolab/merge_kallisto:0.6"
"docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell:
"(merge_kallisto.R \
......@@ -1118,7 +1118,7 @@ rule pca_kallisto:
threads: 1
singularity:
"docker://zavolab/zpca:0.8.3-1"
"docker://quay.io/biocontainers/zpca:0.8.3.post1--pyh5e36f6f_0"
shell:
"(zpca-tpm \
......
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