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Commit 3a9ec893 authored by Dominik Burri's avatar Dominik Burri
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Set appropriate parameter. Fixes #83

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2 merge requests!76Bump version to v0.2.0,!66Set STAR multimapper parameter
Pipeline #10990 passed
Stage: test
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workflow/rules/paired_end.snakefile.smk
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...@@ -228,7 +228,7 @@ rule pe_map_genome_star: ...@@ -228,7 +228,7 @@ rule pe_map_genome_star:
--readFilesCommand zcat \ --readFilesCommand zcat \
--outSAMunmapped None \ --outSAMunmapped None \
--outFilterMultimapNmax {params.multimappers} \ --outFilterMultimapNmax {params.multimappers} \
--outFilterMultimapScoreRange 1 \ --outFilterMultimapScoreRange 0 \
--outFileNamePrefix {params.outFileNamePrefix} \ --outFileNamePrefix {params.outFileNamePrefix} \
--outSAMattributes All \ --outSAMattributes All \
--outStd BAM_SortedByCoordinate \ --outStd BAM_SortedByCoordinate \
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workflow/rules/single_end.snakefile.smk
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View file @ 3a9ec893
...@@ -182,7 +182,7 @@ rule map_genome_star: ...@@ -182,7 +182,7 @@ rule map_genome_star:
--readFilesCommand zcat \ --readFilesCommand zcat \
--outSAMunmapped None \ --outSAMunmapped None \
--outFilterMultimapNmax {params.multimappers} \ --outFilterMultimapNmax {params.multimappers} \
--outFilterMultimapScoreRange 1 \ --outFilterMultimapScoreRange 0 \
--outFileNamePrefix {params.outFileNamePrefix} \ --outFileNamePrefix {params.outFileNamePrefix} \
--outSAMattributes All \ --outSAMattributes All \
--outStd BAM_SortedByCoordinate \ --outStd BAM_SortedByCoordinate \
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